Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs111465361 chr16:67955241 G/A 2.88E-7 296 20.23 29.57 16.87 KM Plot
CESC rs111569916 chr19:9737074 T/C 3.99E-14 289 21.73 20.63 3.33 KM Plot
CESC rs11167515 chr5:150239471 G/T 1.83E-6 296 21.97 19.87 15.22 KM Plot
CESC rs11168166 chr12:47978263 G/A 6.52E-5 286 21.4 21.97 10 KM Plot
CESC rs111820418 chr16:67737285 A/C 5.63E-6 285 21.07 26.27 16.87 KM Plot
CESC rs111865788 chr5:126112903 G/T 0 292 21.2 20.77 1.73 KM Plot
CESC rs11187596 chr10:95457992 A/G 1.6E-6 296 21.2 24.35 5.23 KM Plot
CESC rs111886458 chr5:96125047 G/A 1.4E-6 299 21.33 24.08 6.73 KM Plot
CESC rs111934528 chr16:67718584 A/G 3.96E-6 286 21.07 26.32 16.87 KM Plot
CESC rs111965736 chr3:129175411 C/T 5.09E-5 294 21.2 20.95 14.73 KM Plot
CESC rs112045239 chr22:42329284 G/A 8.84E-5 293 22.93 18.38 6.6 KM Plot
CESC rs11205871 chr1:52081887 T/C 4.32E-5 293 21.13 25.63 16.97 KM Plot
CESC rs112283617 chr3:129215668 A/C 4.92E-5 294 21.73 20.63 14.73 KM Plot
CESC rs112338110 chr7:51832891 G/T 4.25E-5 291 21.57 19 14.18 KM Plot
CESC rs11235937 chr11:73586529 A/G 1.27E-5 299 16.67 25.77 21.2 KM Plot